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Unravelling Nature's Networks: from Microarray and Proteomic Analysis to Systems Biology
Organizers:
Nick Monk (Sheffield, UK)
Neil Lawrence (Sheffield, UK)
Sponsors:
The Centre for Bioinformatics and Computational Biology, University of Sheffield
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Data Acquisition
09:00 - 09:30 Registration and coffee
Matthew Holley (Sheffield, UK)
Functional genomics of inflammatory signalling
Steve Dower (Sheffield, UK)
Systems biology markup language: Level 2 and beyond
Selected Poster Presentation - Andrew Finney (Hertfordshire, UK)
Control analysis of microarray data
Selected Poster Presentation - R. Keira Curtis (Cambridge, UK)
11:00 - 11:30 Coffee/tea break
Defining the transcriptional regulatory networks underlying development of the mouse forebrain
Rick Livesey (Cambridge, UK)
Interpreting correlations in metabolic networks
Selected Poster Presentation - Ralf Steuer (Potsdam, Germany)
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Data Analysis
Feature selection in functional classification of micro-array gene expression data
Mahesan Niranjan (Sheffield, UK)
Mining a tandem mass spectrometry database
Terry Speed (Parkville, Australia)
15:20 - 15:45 Coffee/tea break
Functional annotation and data quality assessment through integrated analysis of genome-scale data
Patrick Kemmeren (Utrecht, Netherlands)
Surrogate markers to determine drug activity
Selected Poster Presentation - Carol McClelland (Kent, UK)
16:45 - 18:00 Poster session and refreshments
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From Data to Networks
Yeast two-hybrid protein-protein interactions don't live in a small world
Alun Thomas (Utah, UT, USA)
Supervised classification for gene network reconstruction
Analysis and Modelling of Signal Transduction Pathways in Systems Biology
Kwang-Hyun Cho (UMIST, UK)
11:00 - 11:30 Coffee/tea break
A probablistic model for the extraction of expression levels from oligonucleotide arrays
Selected Poster Presentation - Marta Milo (Sheffield, UK)
A petri net framework for the representation of biological knowledge
Selected Poster Presentation - John Pinney (Leeds, UK)
Selected Poster presentation - Dirk Husmeier (Edinburgh, UK)
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Modelling Interaction Networks
Reconstructing Gene Networks: What Are the Limits?
Jaroslav Stark (Imperial College, London, UK)
Modelling the controls of the eukaryotic cell cycle
Béla Novák (Budapest, Hungary)
Integration of data, mathematical models and software for cell and developmental simulation
Eric Mjolsness (California, CA, USA)
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