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72nd Harden Conference - RNA regulators of gene expression

22—25 July 2012

Robinson College, Cambridge, UK



Meeting background

Our understanding of the role played by RNA molecules in the control of gene expression has evolved rapidly within recent years. Novel regulatory RNA elements have been identified in both eukaryota and prokaryota, including siRNAs, piRNAs, miRNAs, sRNAs, CRISPRs, riboswitches and RNA thermometers. These elements can fine tune mRNA metabolism according to the output of complex signalling networks or may provide simple on/off switches that respond to macroscopic changes in the cellular environment (e.g. temperature). They vary in size, in structure and in functional mechanism.

 

Although important differences exist in the RNA regulation of prokaryota and eukaryota, parallels are starting to emerge. The aim of this meeting is to provide a forum to discuss both parallels and differences, achieving a better understanding of the role of RNA in regulating gene expression.

 

The speakers of this Harden conference will discuss their work on RNA-based regulation in different organisms. Scientists in the audience, also working on a diverse range of systems, will take on the discussion in two poster sessions and informal events.
 

Organizers:
Kristine Arnvig (MRC-NIMR, United Kingdom)
Andres Ramos (MRC-NIMR, United Kingdom)

Evolution and processing of ncRNA

 

Sunday 22 July 2012
16:00 - 17:00 Registration

17:00 - 17:15
Introduction
Andres Ramos and Kristine Arnvig (MRC-NIMR, United Kingdom)
17:15 - 18:00
Evolution of mammalian lincRNome
Eugene Koonin (National Institute of Health, U.S.A)
18:00 - 18:30
Biogenesis of PIWI-interacting RNAs in Drosophila
Mikiko Siomi (University of Tokyo, Japan)
18:30 - 19:00
Maturation of small interfering RNAs in the CRISPR/Cas adaptive immune system
Emmanuelle Charpentier (Umeå University, Sweden)
19:00 - 21:00 Buffet Dinner

Eukaryotic ncRNA I

 

Monday 23 July 2012
09:00 - 09:30
Small RNAs: from genome maintenance to innate immunity
Eric Miska (University of Cambridge, United Kingdom)
09:30 - 10:00
Functional consequences of KSRP-dependent miRNA biogenesis
Roberto Gherzi (National Institute for Cancer Research, Italy)
10:00 - 10:20
Selected Oral Communication
10:20 - 10:50 Coffee/tea break

10:50 - 11:20
MicroRNAs in cancer
Martin Bushell (University of Leicester, United Kingdom)
11:20 - 11:40
Selected Oral Communication
11:40 - 12:00
Selected Oral Communication
12:00 - 13:30 Lunch

Eukaryotic ncRNA II

 

Monday 23 July 2012
13:30 - 14:00
Small RNA mediated silencing: lessons from plants
Herve Vaucheret (Institut Jean-Pierre Bourgin, France)
14:00 - 14:30
Regulatory function of microRNAs in mouse retinal neurons
Jacek Krol (Friedrich Miescher Institute for Biomedical Research, Switzerland)
14:30 - 14:50
Selected Oral Communication
14:50 - 15:20 Coffee/tea break

15:20 - 15:50
Alternative poly-adenylation: Genomic and molecular analyses provide clues to a genetic disease
Reuven Agami (The Netherlands Cancer Institute, The Netherlands)
15:50 - 16:10
Selected Oral Communication
16:10 - 16:30
Selected Oral Communication
16:30 Visit to historical college or punting on the river Cam

18:00 - 19:30 Poster session with drinks reception

19:30 Dinner

Prokaryotic ncRNA I (cis-acting RNA)

 

Tuesday 24 July 2012
09:00 - 09:30
Special RNA sequences and transcription antitermination in ribosomal operons in E. coli
Cathy Squires (Tufts Medical School, U.S.A)
09:30 - 10:00
Regulating with RNA
Shoshy Altuvia (Hebrew University, Israel)
10:00 - 10:20
Selected Oral Communication
10:20 - 10:50 Coffee/tea break

10:50 - 11:20
Regulating a regulator: RNA-mediated control of the virulence activator PrfA in Listeria monocytogenes
Jörgen Johansson (Umeå University, Sweden)
11:20 - 11:40
Selected Oral Communication
11:40 - 12:00
Selected Oral Communication
12:00 - 13:30 Lunch

Prokaryotic ncRNA II (trans-acting RNA)

 

Tuesday 24 July 2012
13:30 - 14:00
Bacterial sRNAs regulating transcription factors: mechanistic aspects and regulatory properties
Gerhart Wagner (University of Uppsala, Sweden)
14:00 - 14:30
Small RNA regulation of the multi-cellular adhesive lifestyle of Escherichia coli
Poul Valentin-Hansen (University of Southern Denmark, Denmark)
14:30 - 14:50
Selected Oral Communication
14:50 - 15:25 Coffee/tea break

15:25 - 15:55
Deep sequencing based discovery of small noncoding RNAs in bacteria
Jörg Vogel (University of Würzburg, Germany)
15:55 - 16:25
Regulatory pseudoknot RNA controls a suicidal bacterial Type III toxin-antitoxin system with altruistic phage abortive infection capacity
George Salmond (University of Cambridge, United Kingdom)
16:25 - 16:45
Selected Oral Communication
16:45 - 18:30 Poster session with drinks reception

20:00 Conference Dinner

RNA regulating transcription

 

Tuesday 24 July 2012
10:20 - 11:00 Coffee/tea break

Wednesday 25 July 2012
09:00 - 09:30
On the mechanism of target selection by repressor noncoding RNAs of the mouse X inactivation centre
Anton Wutz (Wellcome Trust, United Kingdom)
09:30 - 10:00
Regulation of mammalian transcription by non-coding RNAs
James Goodrich (University of Colorado, U.S.A)
10:00 - 10:20
Selected oral communication
10:20 - 11:00 Coffee/tea break

11:00 - 11:30
Computational methods for finding, aligning and analyzing long non coding RNAs
Cedric Notredame (Centre for Genomic Regulation, Spain)
11:30 - 11:50
Selected Oral Communication
11:50 Lunch and departure