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Conferences and Training Events

The Biochemical Society provides an extensive range of events, including scientific conferences, outreach activities, medal lectures and policy and education events.  

 

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Sponsored by:

Quantitative Proteomics

22—23 May 2017

University of Liverpool in London, London, UK



This training event will continue the format of previous Training Events, and will use a mixture of lectures and small group teaching to achieve a high level of awareness of the issues and problems inherent in quantitative proteomics. The course will run over two days (with a problem solving reception on the evening of the first day, followed by a course dinner). 

Organizers:
Rob Beynon (University of Liverpool, UK)
Victoria Harman (University of Liverpool, UK)
Monday 22 May 2017
10:00 - 11:00 Registration

11:00 - 11:15 Introduction and Welcome

Landscapes and strategies

Monday 22 May 2017
11:15 - 11:45
Introduction: An overview of quantitative proteomics workflows – experimental design, workflows and analysis
Rob Beynon (University of Liverpool, United Kingdom)
11:50 - 12:30
Considerations in experimental design and statistical analysis in quantitative proteomics
Kathryn Lilley (University of Cambridge, United Kingdom)
12:30 - 13:30 Lunch

13:30 - 14:05
Label-free or label mediated, relative or absolute?
Claire Eyers (Institute of Integrative Biology, United Kingdom)
14:05 - 14:15 Briefing and relocation to small classrooms

Selected topics in quantitative proteomics

Monday 22 May 2017
14:15 - 15:30
Small group session 1 (please see below)
15:30 - 15:45 Refreshment Break

15:45 - 17:00
Small group session 2 (please see below)
17:00 - 19:00 Ask the Experts
Drinks reception

Landscapes and strategies

Tuesday 23 May 2017
09:00 - 09:40
Bioinformatics for quantitative proteomics
Simon Hubbard (University of Manchester, United Kingdom)
09:40 - 10:30
Stable isotopes in quantitative proteomics
Rob Beynon (University of Liverpool, UK)
10:30 - 11:00 Refreshment Break

Selected topics in quantitative proteomics

Tuesday 23 May 2017
11:00 - 12:15
Small group session 3 (please see below)
12:15 - 13:00 Lunch

13:00 - 14:15
Small group session 4 (please see below)
14:15 - 14:30 Refreshment Break

Landscapes and strategies

Tuesday 23 May 2017
14:30 - 15:00
Design and implementation of a quantitative proteomics study
All instructors
15:00 Closing Remarks

Small group sessions

Selected topics in quantitative proteomics

 

Four rounds of 1h 15min each. 

 

Group A - Quantification using MASCOT/Distiller.

John Cottrell (Matrix Science)

 

Group B – Targeted quantitative analyses

Stephen Holman (University of Liverpool)

 

Group C - Quantification using MaxQuant

Philip Brownridge (University of Liverpool)

 

Group D - Inspection, visualisation and analysis of quantitative proteomics data

Dean Hammond (University of Liverpool)

 

Group E - Statistical design of a quantification experiment

Kathryn Lilley - (University of Cambridge)

 

Group F - Intensity-based label free analysis using Progenesis

Martin Wells – (Waters Corp)

 

Group G – Data independent quantification and SWATH-type approaches

Cathy Lane - (AB SCIEX)

 

Group I – Quantification using PEAKS
Baozhen Shan (Bioinformatics Solutions)

 

Group J – Isobaric labelling for quantification

Jenny Ho (Thermo Fisher)