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The Biochemical Society provides an extensive range of events, including scientific conferences, outreach activities, medal lectures and policy and education events.  

 

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Quantitative Proteomics and Data Analysis

4—5 April 2016

Queen Hotel, Chester, UK



This training day will meet two needs:

 

1.  It will continue the format of the previous two Training Days, and will use a mixture of lectures and small group teaching to achieve a high level of awareness of the issues and problems inherent in quantitative proteomics.

 

2.  It will precede the third iteration of a highly successful meeting on Quantitative Proteomics (ProteoMMX 4.0). This ensures that newcomers to the field are steeped in the jargon, and indeed, the complexity, of quantitative proteomics before they take part in a highly detailed but relaxed and friendly conference on this specific topic.


Registration for this training day is open.

 

Approved by the Royal Society of Biology for the purpose of CPD, this event may be counted as 36 CPD credits.

Organizers:
Rob Beynon (University of Liverpool, United Kingdom)
Victoria Harman (University of Liverpool, United Kingdom)
Claire Eyers (University of Liverpool, United Kingdom)
Monday 4 April 2016
12:30 - 13:45 Registration/Lunch

13:45 - 14:00 Introduction and Welcome

Landscapes and strategies

Monday 4 April 2016
14:00 - 14:30
An overview of quantitative proteomics workflows – experimental design, workflows and analysis
Rob Beynon (Institute of Integrative Biology, United Kingdom)
14:30 - 15:10
Considerations in experimental design and statistical analysis in quantitative proteomics
Kathryn Lilley (University of Cambridge, United Kingdom)
15:10 - 15:50
Label-free or label mediated, relative or absolute?
Claire Eyers (Institute of Integrative Biology, United Kingdom)
15:50 - 16:20 Tea/Coffee Break

16:20 - 16:50
Bioinformatics for quantitative proteomics
Simon Hubbard (University of Manchester, United Kingdom)
16:50 - 17:20
Tools and standards in reporting quantitative proteomics data
Andy Jones (University of Liverpool, United Kingdom)
17:20 - 17:40 Question and Answer Session

18:00 - 20:00 Drinks Reception

Pick and Mix round tables

Tuesday 5 April 2016

 

 

08:45 - 09:00 Introduction for session 2

 

09:00 - 12:00  Three rounds of ~1 hour each. All participants attend their allocated three tables.

 

Table A - Quantification using MASCOT/Distiller.
John Cottrell
(Matrix Science)

 

 
Table B -
Designing an SRM quantification study.
Stephen Holman and Philip Brownridge (University of Liverpool)

 

 
Table C -
Quantification using MaxQuant
Sara ten Have (University of Dundee)

 

 

Table D - Inspection, visualisation and analysis of quantitative proteomics data
Laurent Gatto (University of Cambridge)

 

 

Table E - Statistical design of a quantification experiment
Kathryn Lilley - (University of Cambridge)

 

               

Table F - Intensity-based label free analysis using Progenesis
Agnes Corbin (Waters Corp)

 

               

Table G – Data independent quantification and SWATH-type approaches
Sibylle Heidelberger - (AB SCIEX)

      
        

Table H - SILAC and whole organism studies
Dean Hammond (University of Liverpool)

 

               

Table I – Absolute and relative quantification
Stefan Tenzer (University of Mainz)

Tuesday 5 April 2016
12:00 - 12:30 Closing Remarks